Index A | B | C | D | E | F | G | I | K | L | M | N | P | R | S | T | V A active_brownian_2d() (in module genepy3d.util.geo) active_brownian_3d() (in module genepy3d.util.geo) add_noise() (genepy3d.obj.curves.SimuIntrinsic method) align() (in module genepy3d.obj.curves) angle2vectors() (in module genepy3d.util.geo) angle3points() (in module genepy3d.util.geo) append() (genepy3d.obj.points.Points method) available_formats() (in module genepy3d.obj.surfaces) B bbox() (genepy3d.obj.points.Points method) build_scales_from_radius() (genepy3d.obj.curves.RadiusScaleTable method) C Catmaid (class in genepy3d.io.catmaid) CatmaidApiTokenAuth (class in genepy3d.io.base) center() (genepy3d.obj.points.Points method) compute_acceleration() (genepy3d.objext.simpletracks.SimpleTrack method) compute_angles() (genepy3d.obj.curves.Curve method) (genepy3d.obj.trees.Tree method) compute_angles_vector() (genepy3d.obj.curves.Curve method) (genepy3d.obj.trees.Tree method) compute_curvature() (genepy3d.obj.curves.Curve method) compute_derivative() (genepy3d.obj.curves.Curve method) compute_direction_change() (genepy3d.obj.curves.Curve method) compute_length() (genepy3d.obj.curves.Curve method) (genepy3d.obj.trees.Tree method) compute_local_3d_scale() (genepy3d.obj.curves.Curve method) compute_local_3d_scale_radius() (genepy3d.obj.curves.Curve method) (genepy3d.obj.trees.Tree method) compute_local_3d_scale_sigma() (genepy3d.obj.curves.Curve method) (genepy3d.obj.trees.Tree method) compute_msd() (genepy3d.objext.simpletracks.SimpleTrack method) compute_scales_from_radius() (genepy3d.obj.curves.RadiusScaleTable method) compute_sphericity() (genepy3d.obj.surfaces.Surface method) compute_spine() (genepy3d.obj.trees.Tree method) compute_strahler_order() (genepy3d.obj.trees.Tree method) compute_time_gap() (genepy3d.objext.simpletracks.SimpleTrack method) compute_torsion() (genepy3d.obj.curves.Curve method) compute_tortuosity() (genepy3d.obj.curves.Curve method) compute_velocity() (genepy3d.objext.simpletracks.SimpleTrack method) compute_wiggliness() (genepy3d.obj.curves.Curve method) convolve_gaussian() (genepy3d.obj.curves.Curve method) (genepy3d.objext.simpletracks.SimpleTrack method) coors (genepy3d.obj.curves.Curve attribute) (genepy3d.obj.points.Points attribute) (genepy3d.objext.simpletracks.SimpleTrack attribute) coors_to_pixel() (genepy3d.obj.curves.Curve method) copy() (genepy3d.obj.trees.Tree method) crv (genepy3d.obj.curves.RadiusScaleTable attribute) Curve (class in genepy3d.obj.curves) D decompose_intrinsicdim() (genepy3d.obj.curves.Curve method) decompose_intrinsicdim_sequential() (in module genepy3d.obj.curves) decompose_leaves() (genepy3d.obj.trees.Tree method) decompose_segments() (genepy3d.obj.trees.Tree method) decompose_spines() (genepy3d.obj.trees.Tree method) denoise() (genepy3d.obj.curves.Curve method) (genepy3d.objext.simpletracks.SimpleTrack method) dfcon (genepy3d.io.catmaid.Catmaid attribute) dfneu (genepy3d.io.catmaid.Catmaid attribute) E emd() (in module genepy3d.obj.points) (in module genepy3d.util.geo) estimate_noise_variance() (genepy3d.obj.curves.Curve method) evaluate() (genepy3d.obj.curves.SimuIntrinsic method) export_to_VTK() (genepy3d.obj.points.Points method) (genepy3d.obj.surfaces.Surface method) extract_subtrees() (genepy3d.obj.trees.Tree method) F faces (genepy3d.obj.surfaces.Surface attribute) filter_by_distance() (genepy3d.objext.simpletracks.SimpleTrack method) filter_by_length() (genepy3d.objext.simpletracks.SimpleTrack method) filter_by_time_interval() (genepy3d.objext.simpletracks.SimpleTrack method) fit_plane() (genepy3d.obj.points.Points method) fix_equal_axis() (in module genepy3d.util.plot) from_catmaid_server() (genepy3d.obj.trees.Tree class method) from_csv() (genepy3d.io.catmaid.Catmaid class method) (genepy3d.obj.curves.Curve class method) (genepy3d.obj.points.Points class method) from_eswc() (genepy3d.obj.trees.Tree class method) from_file() (genepy3d.obj.surfaces.Surface class method) from_ims() (genepy3d.obj.trees.Tree class method) from_ply() (genepy3d.obj.surfaces.Surface class method) from_points_alpha_shape() (genepy3d.obj.surfaces.Surface class method) from_points_qhull() (genepy3d.obj.surfaces.Surface class method) from_server() (genepy3d.io.catmaid.Catmaid class method) from_stl() (genepy3d.obj.surfaces.Surface class method) from_swc() (genepy3d.obj.trees.Tree class method) from_table() (genepy3d.obj.trees.Tree class method) from_text() (genepy3d.obj.curves.Curve class method) (genepy3d.obj.points.Points class method) from_volume() (genepy3d.obj.surfaces.Surface class method) G gen() (genepy3d.obj.curves.SimuIntrinsic method) gen_ellipsoid() (in module genepy3d.obj.points) gen_sphere() (in module genepy3d.obj.points) genepy3d module genepy3d.io module genepy3d.io.base module genepy3d.io.catmaid module genepy3d.io.swc module genepy3d.io.trackmate module genepy3d.obj module genepy3d.obj.curves module genepy3d.obj.points module genepy3d.obj.surfaces module genepy3d.obj.trees module genepy3d.objext module genepy3d.objext.simpletracks module genepy3d.util module genepy3d.util.geo module genepy3d.util.plot module geo_len() (in module genepy3d.util.geo) get_bbox() (genepy3d.obj.surfaces.Surface method) (genepy3d.obj.trees.Tree method) get_branchingnodes() (genepy3d.obj.trees.Tree method) get_children() (genepy3d.obj.trees.Tree method) get_connectors() (genepy3d.obj.trees.Tree method) get_coordinates() (genepy3d.obj.trees.Tree method) get_curve() (genepy3d.obj.curves.SimuIntrinsic method) get_features() (genepy3d.obj.trees.Tree method) get_innervation_relation() (genepy3d.io.catmaid.Catmaid method) get_leaves() (genepy3d.obj.trees.Tree method) get_neuron_id() (genepy3d.io.catmaid.Catmaid method) (genepy3d.io.swc.SWC method) get_neuron_id_from_server() (genepy3d.io.catmaid.Catmaid static method) get_neuron_name() (genepy3d.io.catmaid.Catmaid method) get_neurons() (genepy3d.io.catmaid.Catmaid method) (genepy3d.io.swc.SWC method) get_number_nodes() (genepy3d.obj.trees.Tree method) get_obbox() (genepy3d.obj.surfaces.Surface method) get_obbox_axes() (genepy3d.obj.surfaces.Surface method) get_paraboloid_centroid() (genepy3d.obj.surfaces.Surface method) get_parent() (genepy3d.obj.trees.Tree method) get_preorder_nodes() (genepy3d.obj.trees.Tree method) get_qhull() (genepy3d.obj.surfaces.Surface method) get_root() (genepy3d.obj.trees.Tree method) get_synaptic_relation() (genepy3d.io.catmaid.Catmaid method) get_tracks() (genepy3d.io.trackmate.Spots method) I id (genepy3d.obj.trees.Tree attribute) is_moving() (genepy3d.objext.simpletracks.SimpleTrack method) K kerlen (genepy3d.obj.curves.RadiusScaleTable attribute) L l2() (in module genepy3d.util.geo) M main_turns() (genepy3d.obj.curves.Curve method) main_turns_old() (genepy3d.obj.curves.Curve method) max_seg (genepy3d.obj.curves.SimuIntrinsic attribute) merge() (in module genepy3d.objext.simpletracks) mo (genepy3d.obj.curves.RadiusScaleTable attribute) module genepy3d genepy3d.io genepy3d.io.base genepy3d.io.catmaid genepy3d.io.swc genepy3d.io.trackmate genepy3d.obj genepy3d.obj.curves genepy3d.obj.points genepy3d.obj.surfaces genepy3d.obj.trees genepy3d.objext genepy3d.objext.simpletracks genepy3d.util genepy3d.util.geo genepy3d.util.plot N name (genepy3d.obj.trees.Tree attribute) nb_seg (genepy3d.obj.curves.SimuIntrinsic attribute) nb_tracks (genepy3d.io.trackmate.Spots attribute) nodes (genepy3d.obj.trees.Tree attribute) norm() (in module genepy3d.util.geo) npoints (genepy3d.obj.curves.SimuIntrinsic attribute) P params (genepy3d.obj.curves.SimuIntrinsic attribute) path() (genepy3d.obj.trees.Tree method) pca() (genepy3d.obj.points.Points method) plot() (genepy3d.obj.curves.Curve method) (genepy3d.obj.curves.SimuIntrinsic method) (genepy3d.obj.points.Points method) (genepy3d.obj.surfaces.Surface method) (genepy3d.obj.trees.Tree method) plot_decomposed_table() (genepy3d.obj.curves.Curve method) plot_intrinsicdim() (genepy3d.obj.curves.Curve method) plot_line() (in module genepy3d.util.plot) plot_point() (in module genepy3d.util.plot) plot_ridge_map() (genepy3d.obj.curves.Curve method) Points (class in genepy3d.obj.points) prune_leaves() (genepy3d.obj.trees.Tree method) R r (genepy3d.obj.curves.RadiusScaleTable attribute) RadiusScaleTable (class in genepy3d.obj.curves) random_state (genepy3d.obj.curves.SimuIntrinsic attribute) read_spots() (in module genepy3d.io.trackmate) remove_tracks() (genepy3d.io.trackmate.Spots method) remove_zero_replica (genepy3d.obj.curves.SimuIntrinsic attribute) resample() (genepy3d.obj.curves.Curve method) (genepy3d.obj.trees.Tree method) (genepy3d.objext.simpletracks.SimpleTrack method) rotation_matrix() (in module genepy3d.util.geo) S scale_space() (genepy3d.obj.curves.Curve method) seg_lbl (genepy3d.obj.curves.SimuIntrinsic attribute) sigma (genepy3d.obj.curves.SimuIntrinsic attribute) SimpleTrack (class in genepy3d.objext.simpletracks) SimuIntrinsic (class in genepy3d.obj.curves) size (genepy3d.obj.curves.Curve property) (genepy3d.obj.points.Points property) split() (genepy3d.obj.surfaces.Surface method) (genepy3d.objext.simpletracks.SimpleTrack method) Spots (class in genepy3d.io.trackmate) spots (genepy3d.io.trackmate.Spots attribute) summary() (genepy3d.obj.trees.Tree method) Surface (class in genepy3d.obj.surfaces) SWC (class in genepy3d.io.swc) T test_isotropy() (genepy3d.obj.points.Points method) time (genepy3d.objext.simpletracks.SimpleTrack attribute) to_csv() (genepy3d.io.catmaid.Catmaid method) to_curve() (genepy3d.obj.points.Points method) (genepy3d.obj.trees.Tree method) to_points() (genepy3d.obj.curves.Curve method) (genepy3d.obj.surfaces.Surface method) (genepy3d.obj.trees.Tree method) to_surface_alphashape() (genepy3d.obj.points.Points method) to_surface_qhull() (genepy3d.obj.points.Points method) token (genepy3d.io.base.CatmaidApiTokenAuth attribute) trackid_lst (genepy3d.io.trackmate.Spots attribute) tracks_nb_spots() (genepy3d.io.trackmate.Spots method) transform() (genepy3d.obj.curves.Curve method) (genepy3d.obj.points.Points method) Tree (class in genepy3d.obj.trees) V vector2points() (in module genepy3d.util.geo) vector_axes_angles() (in module genepy3d.util.geo) vector_spherical_angles() (in module genepy3d.util.geo) vertices (genepy3d.obj.surfaces.Surface attribute)
